Austin Journal of Genetics and Genomic Research
Open Access
Special Article - Cancer Epigenetics
Biased Dismissal of Epigenetic Evidence for “Clean- Diesel” Carcinogenicity and Genotoxicity
*Corresponding author:
Received: March 15, 2016; Accepted: March 31, 2016;
Published: April 04, 2016
Abstract
In 2012, the International Agency for Research on Cancer (IARC) named Traditional Diesel Exhaust (TDE) a “known human carcinogen”. Most western nations agreed, passing new regulations. Yet the US denies TDE is a known carcinogen, says scientific data are uncertain, and does not regulate TDE emissions of 80 percent of
Keywords: ACES; Air pollution; Diesel; IARC; Particulate matter
Introduction
The World Health Organization estimates that about 7 million people die prematurely every year as a result of air pollution. It says fine and ultrafine particles, like those from diesel engines, are the single most lethal form of air pollution because of their carcinogenicity, cytotoxicity, embryotoxicity, genotoxicity, and reproductive toxicity
In 2012, the International Agency for Research on Cancer (IARC), part of the World Health Organization, (WHO) named diesel exhaust, especially diesel exhaust, especially DPM a “known human carcinogen” and called for tighter regulations. Most western nations and medical associations agreed, and Europe passed new regulations. The US, however, denies that DPM is a known human carcinogen. Because it says DPM is merely “likely to be carcinogenic to humans,” it has failed to name DPM a “hazardous air pollutant”. Yet it admits that the cancer risks from USTDE vehicles, mostly from DPM, are seven times greater than the combined risk of all 187 air toxics that the U.S. Environmental Protection Agency
EPA says it has no reliable mechanism of action for DPM induction of cancer
However, the preceding
(2)likewise appears questionable because knowing that something is carcinogenic is independent of knowing precisely how, through what mechanisms, it is carcinogenic. After scientists find a carcinogenic
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The Critical Role of Epigenetics in DPM Carcinogenicity
Thus apart from their disagreement over whether DPM is a “known” or a “likely” human carcinogen, IARC, WHO, and
Epidemiological studies have identified factors such as DPM, associated with lung and other cancers, while animal tests and human studies have identified the epigenetic mechanisms and molecular pathways that tie specific factors to different cancers. All three types of studies provide evidence for a sequence of epigenetic and genetic effects as malignancy progresses. Loss of DNA methylation was one of the first epigenetic changes described in human cancer, and soon scientists showed that overall 5mC content was inversely associated with tumor progression [24]. In the 30 years since publication of these classic epigenetics findings, almost every type of cancer has been shown to have an overall deficiency of 5mC compared with normal tissue, something that increases genomic instability and promotes the progression of tumorigenesis [23]. Depending on the different cancers, abnormal patterns of methylation arise, causing both hypomethylation of distal regulatory regions and repetitive
[27]and distinct pathways of carcinogenesis within different tumor sites [23,28,29].
FlawedScienceandFailuretoReliablyAssess NTDE Carcinogenicity and Genotoxicity
Given established scientific consensus that epigenetic changes
are likely key mechanisms in carcinogenicity and genotoxicity, it is puzzling that the 2015 Advanced Collaborative Emissions Study (ACES) of NTDE health effects,
For the last 20 years, scientists have shown that even
Ignoring Epigenetic Evidence for Diesel- Caused Lung Cancers
Despite the science of the preceding 20 years, two of the most questionable and
in the lungs” [43].
The preceding ACES claims arguably err because DPM pollution, the deadliest part of
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associated with inflammation, oxidative stress, and higher risk for lung cancer and asthma [44]. Epigenetic assessment likewise implicates inactivation of the
Ignoring Evidence for
Just as ACES denies its study revealed any precancerous effects, it also denies that NTDE causes any genotoxic effects [43]. Yet because this ACES claim is based on studies that are
First, the ACES claim that NTDE causes no genotoxic effects is questionable because ACES researchers did only very
A second reason that ACES tests of NTDE for genotoxic effects likely produced
used a nonscientific response. It said that adding positive controls “would have substantially increased the complexity and cost of the study and would have posed enormous logistical challenges” [42]. Obviously
A third problem with the ACES tests of NTDE for genotoxic effects is that none of the genotoxicity researchers used lung cells. Instead one group used blood cells and another group used brain cells. They should also have used lung cells because they reveal the direct and early effects of NTDE; organs like the blood reveal indirect and later effects of NTDE. Because ACES used such
A fourth problem with the ACES tests of NTDE for genotoxic effects is that they likely produced
A fifth problem with ACES genotoxicity studies are their ignoring the fact that DPM is a
[72].Moreover because ACES admitted that NTDE removes only 80 percent of TDE hydrocarbons [42], and NTDE PAHs remain a potential source of genotoxicity, it is puzzling that ACES genotoxicity studies failed to assess damage from PAHs [49].
A sixth scientific deficiency of ACEs genotoxicity studies, again likely leading to
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NTDE, nor all the relevant tests. Given earlier ACES genotoxicity problems, such as wrong endpoints, low power, and absence of positive controls, ACES could have redone some of the research supporting genotoxicity, instead of merely doing new studies of questionable methodology. Top journals, assessing genotoxicity in TDE and NTDE, illustrate reliable methods that ACES could have copied. Yet ACES did assessment neither of specific genes known to be harmed by diesel exhaust, nor of cumulative mutations. Instead ACES researchers used the comet assay that, as ACES conducted it, was able to detect only a few types of known DNA damage. ACES
Regarding this sixth deficiency, why did the ACES authors largely ignore what they admitted, namely, that the scientific literature clearly shows DPM PAHs induce micronucleus formation and genotoxic damage [49]? Why did they ignore animal studies,
Unfortunately, the preceding ACES inconsistencies in claiming both that NTDE has essentially no DPM and
What Caused the ACES Scientific Errors Regarding Carcinogenicity and Genotoxocity of NTDE?
Given replicated scientific studies tying DPM exposure to genotoxic effects such as micronucleus formation, and to lung cancer via epigenetic mechanisms such as DNA methylation, how can ACES claim that exposure to DPM, the deadliest component of TDE and NTDE, causes neither genotoxic, nor cancerous, nor
DNA methylation of specific genes and changes in the expression of
Second, as already noted, in assuming NTDE DPM and PAHs were at “almost ambient [air] levels”, ACES was begging the question, relying on unsubstantiated value judgments.
Third, ACES denied
Fourth, because of HEI/ACES editors’ and reviewers’ misrepresentation of ACES results, they contradicted ACES scientists. For instance, when ACES researchers admitted their studies were underpowered, with only 5 subjects, thus unlikely to detect genotoxicity, HEI/reviewers editors/reviewers disagreed. They put a positive “spin” on the research, denied it was underpowered, and then claimed there was no evidence of genotoxicity [42]. Likewise, though ACES researchers denied finding any lung cancer [82], ACES editors said they found neither cancer nor
Fifth, HEI and some ACES scientists may have used flawed methods because HEI funders had financial conflicts of interests and sought to show NTDE was noncarcinogenic and nongenotoxic. HEI, the nonprofit research organization that oversaw, edited, and funded ACES, admits in the ACES foreword that half of ACES current funding comes from
Answering an Objection
In response to the preceding scientific criticisms of ACES’ methods, how might ACES scientists defend themselves against their ignoring most of the classic epigenetic research and methods showing TDE carcinogenicity and genotoxicity? As already mentioned, ACES scientists assume, before doing their studies, that DPM and PAHs,
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the deadliest components in NTDE are at “almost ambient [air] levels”. By making this assumption, they assume (rather than test whether) earlier TDE research is likely irrelevant to their NTDE studies [49]. For instance, ACES pathologists cite
exposures most likely do not reflect either the hazards or the risks from NTDE” [48].
Second, as already mentioned, even ACES admits that NTDE removes only 90 percent of TDE, including DPM, and only 20 percent of the
Third, NTDE is very dirty, even compared to TDE because both are far above
Fourth, the ACES objection that NTDE is clean and noncarcinogenic also errs in part because NTDE creates more ultrafine PM than was present in the original TDE, and
Conclusion
ACES’ denials of the
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